SSR数据格式转换软件DataFormater

发布时间：2018-11-19 15:15

【摘要】：随着分子群体遗传学的快速发展和SSR标记的广泛应用,一些分子群体遗传学分析软件相继问世。但是不同软件的SSR数据输入文件格式并不一致,人工转换费时费力,且易出错。因此,本研究利用Python高级计算机语言开发了SSR分子标记数据格式转换软件Data Formater。该软件具有友好的图形用户界面,能高效准确的把SSR原始数据快速转换为Popgene、Ntsys、Power Marker、Structure、Tassel、SPAGe Di等常用分子群体遗传学分析软件的输入文件,同时还具过滤稀有等位、过滤无多态位点、用户数据校验等功能。与人工转换相比,Data Formater可大大提高转换的效率和准确性。因此,Data Formater将是分子群体遗传学研究中不可或缺的工具软件。现在用户可以通过Data Formater软件的主页进行下载,网址为:www.ycsjk.com.cn/dataformater/home/,或通过电子邮件renmin@caas.cn索取该软件。
[Abstract]:With the rapid development of molecular population genetics and the wide application of SSR markers, some software of molecular population genetics analysis have been developed. However, the SSR data input file format of different software is not consistent, and manual conversion is time-consuming and error-prone. Therefore, the SSR molecular marker data format conversion software Data Formater. is developed by using Python advanced computer language. The software has a friendly graphical user interface, can efficiently and accurately convert SSR raw data into input files of common molecular genetic analysis software such as Popgene,Ntsys,Power Marker,Structure,Tassel,SPAGe Di, and also has the ability to filter rare alleles. Filtering without polymorphic sites, user data validation and other functions. Compared with manual conversion, Data Formater can greatly improve the efficiency and accuracy of the conversion. Therefore, Data Formater will be an indispensable tool in the study of molecular population genetics. Users can now download the Data Formater software via its home page at www.ycsjk.com.cn/dataformater/home/, or via email renmin@caas.cn.
【作者单位】：中国农业科学院烟草研究所烟草遗传改良与生物技术重点开放实验室;中国农业科学院研究生院;青岛市农业科学研究院;
【基金】：烟草基因组计划重大专项(110201301008) 国家自然科学青年基金(31301320) 作物生物学国家重点实验室开放课题(2013KF12)共同资助
【分类号】：TP319;Q75

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