诺如病毒荧光定量检测方法的建立及氯灭活诺如病毒消毒规律研究
[Abstract]:The purpose of the study is:
Norovirus (NoV) is a major virus that causes non bacterial acute gastroenteritis in the world. It is the main member of the family of the goblet virus. It can cause acute diarrhea, vomiting, and the serious death of the heavy people due to dehydration death or its own immune deficiency. From 1990s to now, NoV G II.4 has gradually become the world's dominant epidemic strain, and has caused at least four global disease epidemics that are spread mainly through the mouth of the.NoV, food contaminated by the virus, human contact, oysters, and drinking water that can spread the virus, and it may also be inhaled through the respiratory tract in the respiratory tract. It is a way of transmission. The virus is highly stable in the environment, but it is very easy to infect people. Therefore, it is also an important cause of the epidemic of diarrhea caused by drinking water. In the 70s of last century, NoV was discovered by electron microscope. At present, the study of the mechanism of NoV disinfection is usually replaced by the lack of tissue cell culture system. Virus, such as mouse NoV (murine norovirus, MNV), cat goblet virus (feline calicivirus, FeCV) and canine goblet virus (canine calicivirus, CaCV). Therefore, investigation and study of the prevalence of NoV in China, establish a rapid and accurate detection method, to provide the basis for the corresponding control strategies and measures; the virus is sterilized and studied. Through the RT-PCR method, the epidemic of NoV in the diarrhoea of Tianjin Children's Hospital in the 2009 10~11 month was studied, and the fluorescence quantitative RT-qPCR of the NoV gene II type was established and evaluated. A preliminary study on the disinfection of NoV in water was carried out by the method of chlorine, which provided reference methods and basis for the detection of pollution of NoV in sewage, the control of disinfection and the rapid detection of public health emergencies.
Research methods:
319 Cases of stool specimens of children with acute diarrhea in the 10~11 month children's Hospital of Tianjin in 2009 were collected, including 198 males and 121 females. The minimum age was two days after birth and the maximum was 9 years. The samples of NoV nucleic acid positive were determined by the RT-PCR method, and the PCR amplification samples were purified and sequenced by the company, and the sample sequence results were edited and Gen The genes published in bank are compared with the Blast sequence to determine the genotype of the samples. According to the literature, the sequence of NoV reference strains are downloaded from Genbank. Bioedit software is used to compare nucleotide multiple sequence analysis and to draw the phylogenetic tree by the MEGA4.1 software adjacent to the site. Statistical method is used to analyze the demographic characteristics of the samples. Materials and clinical data.
The samples of strong positive NoV GII were detected by RT-PCR, the PCR products were purified and transformed, the positive clones of blue leukoplakia were screened, the plasmid was constructed, and copy RNA (cRNA) was transcribed and synthesized as the standard product. The II fluorescent quantitative RT-qPCR method and reaction system of NoV gene were established and optimized, and the standard curve was made, and the sensitivity and specificity of the reaction system were evaluated. Reproducibility and clinical fecal samples were evaluated.
Taking NoV as the research object, using the disinfectant of different concentrations of chlorine (1mg/L, 2mg/L, 3mg/L, 5mg/L, 10mg/L) to treat NoV in water, the inactivation of NoV with three pairs of primers was evaluated, and the primers for the 5 'end, 3' end of NoV and the.PH7.2 primers in the ORF1-ORF2 binding region (see Chapter 1).PH7.2, at room temperature, were not. At the same time, the NoV gene damage site was explored by RT-PCR, and the fluorescence quantitative PCR method was used to further detect the reduction of NoV in the chlorination process. The inactivation of chlorine to NoV was preliminarily studied. The results of the study were as follows:
1. The detection of NoV in stool specimens of children with diarrhea in Tianjin Children's Hospital in 10~11 2009.
Of the 319 specimens examined by RT-PCR, 60 cases of NoV positive.RT-PCR detection showed that 59 cases were NoV GII and 1 were NoV GI, and the constituent ratio was 98.3% and 1.7%., respectively.
The PCR products of 24 cases of NoV positive specimens were purified and sequenced. The results were analyzed by bioedit editing and BLAST comparison. 1 cases were NoV GI and the other 23 were NoVGII type.
Multiple sequence homology comparison found that the sequence homology of 17 strains of sequenced strains and the Nijmegen115 reference strain of Holland, Lincoln House reference strain, Beijing151 strain and Terneuzen70 strain were 71.7 to 99.3%, and the homology of Lincoln House reference strains reached 98 to 99.3%.15 cases, 13 cases were 2006b variant, and 2 cases were GII-3. In 2009, NoV of children with diarrhea in Tianjin city was the main strain of NoV GII/2006b strain, which was similar to the present research in other parts of China. This shows that the prevailing dominant strain in our country is still NoV GII/2006b strain.
Analysis of the distribution of NoV positive cases in different age groups showed that in 60 cases of infected children, the children of 0~1 years old were infected with NoV35, and 1~2 year old children infected NoV16 cases. With the increase of age, the children with diarrhea decreased and the children infected with NoV were also less. The infection of infants with NoV was concentrated on the population of 0~2 years old.
The positive rate of NoV in children with diarrhea in this study was 26.75% (41/157), while the positive rate of NoV in children with diarrhea in the inpatient department was 11.11% (18/162). The statistical analysis of the two differences was statistically significant, indicating that the disease was urgent, self limiting, fast recovery, and most of the patients chose outpatient medical treatment.
Two, the establishment and evaluation of NoV gene II type fluorescence quantitative RT-PCR assay.
The primers used by NoV GII fluorescence quantitative RT-PCR amplification were used for general RT-PCR reaction. 2% agarose gel electrophoresis showed that there were specific bands at 98bp and no other non specific amplification. The primer and probe fluorescence quantitative RT-PCR showed a typical smooth S curve of the fluorescence amplification curve.
The purity of the plasmid DNA was good, the concentration was high, cRNA was purified by transcription in vitro. The OD value of cRNA was in the middle of 1.7~2.0. The purity of the plasmid was better. The slope of the mean concentration of 321.83 mu g/ml. was -3.41, the intercept was 49.79, and the correlation coefficient (R2) was 0.998..
The sensitivity test showed that the method was sensitive and could detect 102 copies/ml of known RNA standard samples at the lowest level.
This method can detect NoV gene II in a special way, without cross reaction with NoV GI type, and no cross reaction with Coxsackie virus B group, poliovirus, enterovirus, stelllike virus, hepatitis A virus, otavirus and rotavirus.
The variation coefficient of Ct value (CV) for the test of standard products was 1.60% and 0.70% respectively. The variation coefficient (CV value) of interbatch test was 0.40% and 0.40% respectively, which were all below 5%, indicating that the system was stable and reproducible.
Three, study on the disinfection of NoV in water by chlorine
RT-PCR results showed that NV3R/NV3F primers were the first to disappear. Secondly, as the dosage of chlorine disinfectant increased, COG2F/G2-SKR primers disappeared. Then, when the dosage of chlorine was from 5mg/L to 10mg/L, NV5R/NV5F primers disappeared. Therefore, we think that the disinfectant liquid chlorine may be in three different amplification. The 3 'terminal of NoV nucleic acid was first damaged, followed by the binding area between ORF1 and ORF2, and then the 5' terminal was damaged.
PH7.2, under the action of 1mg/L at room temperature, the fluorescence quantitative PCR detection based on primer COG2F/G2-SKR showed that the reduction rate of NoV reached 2.16log10. with the increase of chlorine concentration, and the decrease rate of NoV at 5min reached 2.24log10 when the concentration of chlorine was 5mg/L.
Conclusion:
The viral diarrhea caused by NoV in children with diarrhea in Tianjin Children's Hospital in 12009 10~11 months was found, and NoV was the main pathogen causing diarrhea; the children with diarrhea had NoV infection of different genotypes, and the 2006b variant of NoV GII-4 was the main epidemic dominant strain.
2, we established and optimized the method of detecting NoV GII by fluorescence quantitative RT-PCR. This method is stable, sensitive, specific and reproducible, and can be used for rapid detection of public health emergencies.
3, at the 3 'end of NoV nucleic acid, in the binding area of ORF1 and ORF2 and in three different regions of the 5' end, the disinfectant liquid chlorine may first damage the 3 'end of the NoV, and then the binding area of ORF1 and ORF2. As the concentration of chlorine increases, the 5' end of NoV is damaged. As the concentration of chlorine increases, the nucleic acid reduction rate of NoV is also increasing.
【学位授予单位】:中国人民解放军军事医学科学院
【学位级别】:硕士
【学位授予年份】:2012
【分类号】:R155.5
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