西藏小型猪遗传背景分析以及分子遗传标记的研究
[Abstract]:Research background
Tibet hog (Sus scrofa) is one of the * * smaller pigs in the world. It is located in the Qinghai Tibet Plateau, with an elevation of 2500 to 4300m in the agricultural area and semi agricultural and semi pastoral areas. It is distributed in Tibet autonomous region of China, Yunnan, Sichuan and Gansu provinces. * Tibetan pigs preserve relatively pure variety resources and are the only ones that can adapt to the high altitude climate. * due to long-term geographical isolation and environmental differences, Tibetan pigs in different areas have been differentiated to some extent. * * compared with Sichuan Tibetan pigs, the number of locus of Tibetan pigs deviating from Hardy-Weiberg's law is higher than that of Yunnan Tibetan pigs, while that of Sichuan Tibetan pigs is smaller than that of Yunnan Tibetan pigs. Tibetan Pig * * or Yunnan Tibetan Pig carried out some researches, but less research reports on Tibetan pigs from Tibet autonomous region *.2004 introduced 50 Tibetan pigs (female, male and half) from Tibet autonomous region to Tibet for the first time. It was the first time to carry out laboratory animal cultivation of Tibetan pigs and named it "Tibet miniature pig" (Tibet min). I-pig) at the bottom of the.2006 *, we have obtained the quality certificate for the production of Tibet miniature pigs in Guangdong province. At present, the number of livestock has reached 600.
objective
The sequence of mtDNA control region and Cyt B gene sequence of Tibet miniature pig were determined. The genetic differentiation of mtDNA control region and Cyt B gene sequence of Tibet minipigs and their effects on blood physiological and biochemical indexes were studied. The genetic relationship between them was compared with other pig sequences, and the genetic structure of halothane gene loci in Tibet miniature pigs was studied. To detect halothane genotype recessive homozygous individuals, search for unique molecular genetic markers of Tibet miniature pigs, and guide the cultivation of Tibet miniature pigs experimentally.
Method
1 randomly selected 120 Tibet miniature pig blood, extracted genomic DNA from blood by kit, designed primers to amplify the mtDNA control area of Tibet miniature pig and 7 Bama miniature pigs, 23 Guizhou Xiang Pigs and 17 Five Fingers Group pigs, sequenced and compared multiple sequences of the tested sequences with Clustalw software and MEGA3.0 software to determine the mutation sites and haplotypes. * * and establish the phylogenetic tree of Tibet miniature pig and other domestic pigs. 58 * 8 month old Tibet miniature pigs were used to measure blood physiological and biochemical indexes. Blood physiological indexes were 14 items: white blood cells, red blood cells, hemoglobin, platelets, lymphocytes, monocytes, granulocytes, eosinophils, basophils, hematocrit, and flat. BLOOD BIOCHEMICAL INDEXES 11 items: ALT, ALT, ALT/AST, ALT/AST ratio, total protein, alkaline phosphatase, glucose, urea nitrogen, creatinine, total cholesterol, triglyceride, albumin. Statistical analysis was performed with SPSS13.0 statistical software for t-test of two samples. All data were expressed as mean (?) + standard deviation ((?) + SD).
2 the genomic DNA of Tibet miniature pigs and haplotype pigs representing Guizhou * * Xiang Pigs and Five Fingers Group pigs, which represent haplotypes of the 5 * end sequence of mtDNA control area, were designed. Primers were used to amplify the Cyt B gene sequences of four miniature pigs. After sequencing, the nucleotide sequences and amino acid sequences were compared with MEGA3.0 software to establish the phylogenetic tree. * the evolution status of Tibet miniature pigs.
3 using PCR-RFLP technology, we studied the polymorphism of halothane gene in Tibet miniature pig * * *, using the genome samples of Duroc and Landrace pigs as controls, we amplified the halothane gene fragments of 3 pig breeds with specific primers, then performed restriction enzyme (Hha I) digestion and enzyme digestion results, and obtained genotype frequencies by genotype analysis. The HAL~NHAL~N genotype showed two electrophoretic bands of 493 BP and 166 bp, the HAL~NHAL~n genotype showed three electrophoretic bands of 659 bp, 493 BP and 166 bp, and the HAL~nHAL~n genotype showed only one electrophoretic band of 659 bp.
Result
1 previous studies have shown that there are length heterogeneity (15 * 29 repeats) in the tandem repeat region of mtDNA control area in pigs. All repeat fragments are GTACACGTGC, which is called complete duplication. However, this study shows that * Tibet miniature pigs not only have complete duplication (type A) but also have incomplete duplication (B *), that is, the weight of part of Tibet miniature pig 10bp. The complex fragments not only contain GTACACGTGC, but also GTACACATGC and GTACACGTAC fragments and their alternate arrangement. The pedigree analysis showed that this arrangement type was also passed from mother to offspring according to maternal inheritance, and had no relationship with father.
The 3 * end flanking area of mtDNA control area in Tibet miniature pig is 340bp, with less variation sites, and * conservative compared with other domestic pig sequences. There are 20 mutation sites in the 5 'flanking region 704bp, and 26 haplotypes are induced. * the change of three transformation sites (305500691) in 5' flanking region of Tibet miniature pigs is almost identical to that of tandem repeats. The bases of three mutation sites in type B were t, a, a (100%) and the bases of three mutation sites in type A were c, g, g (87%) and the others (13%).
Compared with Tibet * * * pigs, Bama miniature pigs, Guizhou Xiang Pigs and Five Fingers Group pigs mtDNA control area had 5 fewer variants, only 4,4,3 haplotypes. There was only one type of tandem repeat type, A type. Correlation analysis between A and B groups and blood physiological and biochemical characteristics of Tibet miniature pigs showed that A and B group blood There was a significant difference in the number of red blood cells (type A < B, P < 0.05).
2 the analysis of the phylogenetic tree based on haplotypes derived from the 5 * flank region of the control area showed that the Tibet miniature pig had a close relationship with the local pig in China, especially with the * * relationship of several pigs in Southwest China.
3 * Tibet miniature pig and domestic pig * * Cyt B gene sequence is almost the same. Compared with the European pig, there are 16 major mutation sites, including two special transformation sites: 420 locus T - C transformation and 883 - site G - A transformation, almost half. There is an amino acid locus (295 loci) in Tibet miniature pig and other pigs in China. There are three amino acid loci (89295314 loci) in European pig breeds. At the 295 locus, most A Tibet miniature pigs are valine (V) compared with European pigs, while B and A are isoleucine (I.) Bama miniature pigs, Five Fingers Group pigs and Guizhou. The amino acid sequence of Xiang pig is also isoleucine at the 295 locus. (1) it is further confirmed that there is differentiation in the Tibet miniature pig population. The sequence variation in the mtDNA control region is related to the structural change of the functional gene.
The individual halothane genotype of 4120 Tibet miniature pigs was HAL~NHAL~N. No stress sensitive genes were found. The dominant homozygote genotype of halothane gene was HAL~NHAL~N: the frequency of HAL~NHAL~N was 100%, HAL~NHAL~n and HAL~nHAL~n were 0., while 4 heterozygote samples were detected in Duroc pig samples, and 1 heterozygous individuals were detected in Landrace samples. No recessive homozygous individuals were found. * the stress sensitive recessive gene was not found in the Tibet miniature pig population, and the whole population had strong anti stress ability.
conclusion
1 * according to the heterogeneity of the tandem repeats and repetitive fragments in the mtDNA control area of Tibet mini pig, the * Tibet miniature pig population can be divided into A base and B type.A, B base type and 5 'end * three base conversion sites: 305500691, which can be combined to form the genetic markers of Tibet miniature pig. Through the artificial selection, the A type B can be divided into two groups. A small number of variant individuals in A * (13%) were strengthened, and the markers of Tibet miniature pigs were strengthened to form two closed populations. The three transformation sites of B type were t, a and a, and three transformation sites of A closed group were purified to C, G, g..
2 * the type of tandem repeats in Tibet minipigs can be passed from maternal to offspring. The reported domestic pigs are all A type. There is no report on B * *. Therefore, it is proposed that A Tibet miniature pig and other Chinese pigs have a common origin. B type may be the result of A mutation or the origin of two maternal origins.
3 * the complete sequence of Cyt B gene in Tibet miniature pig has two conversion sites, which is corresponding to A type and B * Tibet miniature pig. The analysis of the conversion of nucleotide sequence to amino acid sequence using Mege3.0 software shows that most of the 295th amino acids of Cyt * B in Tibet miniature pig are valine (V), while a few are isoleucine (I). * all the amino acid sequences of pigs were isoleucine (*). The results further confirmed that there were differentiation in the Tibet miniature pig population.
4 * the halothane gene in Tibet miniature pig population did not detect stress sensitive recessive genes. * it indicates that the sensitivity of Tibet miniature pigs is relatively low, and is suitable for experimental studies such as surgery or organ transplantation.
【学位授予单位】:南方医科大学
【学位级别】:博士
【学位授予年份】:2008
【分类号】:R-332
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